Genetic Engineering Competency Catch-Up

Goal:
Describe the role of DNA ligase in replication and explain how DNA ligase is used to create a recombinant DNA.
Describe the possible recombinant plasmids that form when ligating a restriction digest.

Agenda:
Final Teamwork Evaluation
Finish Restriction Digest Slide
Ligation Prediction
Work on Slides

Final Teamwork Evaluation
Follow the Feedback Protocol. Scribe, use the BLUE highlighter to mark the final score for each team member.

Finish Restriction Digest Slide
Left Side:
Define plasmids and restriction enzymes
Use the key to explain what each of the beads represent and why they are important. Refer back to the reading (pg. 46 of reading)
Right Side:
In your petri dish you have the 2 plasmids and 2 restriction enzymes that we worked with today. Work with your elbow partner to create an image for what is in each of the 4 tubes (K+, K-, A+, A-)

Ligation Prediction
Left Side:
Define ligase and recombinant DNA.
Which recombinant plasmid will produce RFP? How do you know that?
Right Side:
Use the model to show all possible ligation products that could be present in the LIG tube. Also show what is in the A+ and K+ tubes.

Work on Slides
By now you should have finished 3 slides: Intro, Restriction Digest, and Ligation

Restriction Digest

Goal:
Model the process of producing recombinant DNA.
Describe the characteristics of plasmids and explain how plasmids are used in cloning a gene.
Describe the function of restriction enzymes and explain how to use restriction enzymes to create a recombinant DNA.

Agenda:
Clone That Gene!
Lab
Summarize

Clone That Gene!
Read and Follow the directions at the end of this chapter.

Lab
Today we will be performing a restriction digest to cut up plasmids so we can make a recombinant plasmid with the rfp gene.

• You will work in teams of 4.
• Follow the lab procedure VERY CAREFULLY. We don't have extra if you mess up. 
• Make sure you use the micropipets properly (remember, 1st stop/2nd stop).

Summarize
On the restriction digest slide in your competency do the following.
Left Side:

1. Define plasmids and restriction enzymes
2. Use the key to explain what each of the beads represent and why they are important. Refer back to the reading (pg. 46)

Right Side:

1. In your petri dish you have the 2 plasmids and 2 restriction enzymes that we worked with today. Work with your elbow partner to create an image for what is in each of the 4 tubes (K+, K-, A+, A-)

Finish Stop Motion

Goal:
Model the process of producing recombinant DNA.
Describe the characteristics of plasmids and explain how plasmids are used in cloning a gene.
Describe the function of restriction enzymes and explain how to use restriction enzymes to create a recombinant DNA.

Agenda:
Vocab Quiz
Finish Stop Motion
Clone That Gene!

Vocab Quiz
Login to Socrative

Finish Stop Motion
Make sure to include the protein purification step.
Once you're done, I will show you how to link it to your Google Slides Competency.

Clone That Gene!
Read and Follow the directions at the end of this chapter.

Genetic Engineering Process

Goal:
Describe the role of biological tools, such as plasmids, restriction enzymes, e.coli, and ligase, in the genetic engineering process.

Agenda:
Warmup
Overview Genetic Engineering Process
Stop Motion

Warmup
Log in to socrative.

Overview Genetic Engineering Process
Link to Slides

Stop Motion
Make a Stop Motion video animating the ENTIRE genetic engineering process. Include the following vocabulary:
Bacteria
Plasmid
Restriction Enzyme
Ligase Enzyme
Human/Animal Inserted DNA (insulin or red protein??....anything you want)
Recombinant DNA
Transformed Bacteria
Protein (insulin,rfp)

Vocab Quiz Tomorrow

Study Quizlet

What is Genetic Engineering?

Goals:
-Provide examples of how genetic engineering can be used to solve medical problems.
-Explain how genetic engineering creates genetically modified organisms that make human proteins from human DNA.

Agenda:
Warmup
Listen
Read
Write

Warmup
Did you find anything interesting in your family health history that might inform how you approach your health care in the future? If you would like, share on this Padlet.

Considering what we reviewed yesterday, what may be causing these genetic diseases?

Listen
CRISPR Radiolab. How could this technology be used to permanently cure genetic diseases?

Read
"What is genetic engineering?" Use the reading to compare and contrast CRISPR and recombinant DNA technology using a venn diagram.

Write
I shared a Google Slides with you. Your competency is to complete these slides. On the intro slide use what you have learned to answer the questions below in complete sentences.

1. Explain the cause of genetic diseases such as Type 1 Diabetes or Breast Cancer. 
2. How could CRISPR be used to provide a permanent cure for genetic diseases?
3. In recombinant DNA technology, scientists modify a bacterial plasmid by adding a human gene in order to produce human proteins. How does this process help in addressing genetic diseases (for example, with insulin)?
4. In our Biotechnology lab sequence how will what we do be different than making insulin?

DNA Review

Goal:
Explain the basic processes of transcription and translation for making proteins.

Agenda:
Pre-Test
Review
Model
Post-Test

Pre-Test
Let's see what you remember about transcription and translation from last year. Go to Kahoot.

Review
Watch this video to review the basic process of transcription and translation.

Model
Using the paper models provided, work with your partner to create an accurate stop motion animation of transcription and translation for a 2 amino acid protein.

1. Write down the steps of protein synthesis in the box provided.
2. Get the steps approved by me.
3. Use the DNA template strand on the board to transcribe and translate 6 nucleotides. Use Stop Motion Studio to animate this process.

Post-Test

Go to Kahoot again :)

Homework:
Complete the "What's Your Story?" worksheet by asking about family health history. 

Graphs

Goal:
Evaluate your system.

Agenda:
Teamwork Rubric
Graphing Data

Teamwork Rubric
You know the drill.

Graphing Data
Google Forms will graph a lot of the data for you but for some sample sets the graphs aren't useful or you may want to get a little more information out of the data. See below.

For free response questions consider:
-Grouping similar responses and putting them in a bar graph
-Using a word cloud. Use the Word Clouds by ABCYa app

Sometimes it may be helpful to compare the responses of 2 separate questions. For example:
-I want to look at the responses for people that live in the 92029 zipcode.
If you would like to graph your data this way I can help you. You will need to use excel.

Finish Survey

Goal:
Create a 10-20 question survey to evaluate your system.

Finish Your Survey
Add the share link to your design Journal

How do you survey?

Goal:
Create a 10-20 question survey to evaluate your system.

Agenda:
Name the New Fish
Why are you surveying?
Create your Survey

Name the New Fish
Vote Here

Why are you surveying?
Grab a whiteboard. With your group, write down:
1. WHAT you want to learn about your system
2. WHY you want to focus on that part of the system
3. WHO you should survey to find out about how the system is working

Create Your Survey
We have created some guidelines for your survey here. Make sure your survey includes the purpose as well as a mixture of questions types.

Models Due

Goal:
Model your system.

Finish Models
Complete your models in Pureflow (or another approved app)

Update Journal
Make sure parts A and B in the systems journal are complete.
I will be renaming your journals based on your project. Don't freak out.

Print Models
Print your models to C211-212 and turn these in to me by the end of class. My goal is to return them to you with feedback by the end of the week.

Keep Working

Goal:
Complete research.
Model system.

Complete Research:
Continue your system research. If you are studying a local community issue, Voice of San Diego has a lot of great articles as does the Union Tribune and KPBS

Model System
Once you have a rough sketch of your model, use Pureflow to make a cleaned up final draft. Here is the rubric I will be grading you on. A 4 has the following components:

• A key is provided to help the viewer understand color codes or symbols.
• Components and relationships are identified and defined based on research.
• Colors, labels, and arrows are used to clearly classify the components and make their relationships easier to understand (e.g., inputs, activities, outputs, outcomes, funding, laws, organizations)
• The components are arranged spatially in a way that is easy to read.

Research

Goal:
Research the history and how your system works.

Agenda:
RESEARCH

Reminders:

• the purpose of your research is to find the history of the system and model how it currently works
• record notes and sources in your shared Google doc, NOT in other apps
• final drafts of your models are due next Wednesday 4/26

If you are having a hard time figuring out what to research, come up with subquestions you might have about their system (who, what, when, where, why, how). For example, a group doing research on puppy mills might ask:

• Who runs puppy mills? Who buys the puppies?
• Where are puppy mills located?
• What are puppy mills?
• Why do people run puppy mills?
• Are there laws against puppy mills? How are they enforced?

You may want to begin drawing out models on the whiteboards. 

Choose Wisely

Goal:
Choose a system that heals the world, fuels the world, feeds the world, or restores and protects the environment.

Agenda:
Project Groups
Fish Name Vote
Choose Your System

Project Groups
Don't get comfy, you're moving seats.

Fish Name Vote
Vote for the fish names here.

Choose Your System
1. Open this document in Google Docs. It is where your group will be recording and sharing notes.
2. Rename your document Period #-First Names Systems Design Journal
3. Share the document with your team members, me (awallace@euhsd.org), and Ms. Stillman (lstillman@euhsd.org)
4. Complete page 1 (choosing your system). YOUR SYSTEM MUST BE APPROVED BEFORE YOU LEAVE TODAY.

Thinking in Systems

Goal:
Define, model, and give examples of systems.

Agenda:
Thinking In Systems
Modeling Systems
Give an Example

Download:
Excerpt from Thinking In Systems - Open in Notability

Thinking in Systems
Read and annotate the excerpt. As you read THINK ABOUT THIS/COMPARE AND CONTRAST:
How do you know whether you are looking at a system or just a bunch of stuff?

Modeling Systems
We will model the Tea Station together.
You will model the digestive system with your table group on whiteboards.

Give an Example
Complete this Google Form

Metacog-what?

Goals:
Articulate the benefits of metacognitive reflection.
Identify the characteristics of a good metacognitive reflection writing.
Engage in productive metacognitive reflection about their badge work.

Agenda:
Upload
Warmup
Reading/Discussion
Deconstruct Exemplar
Write

Download:
Metacognitive Reflection Handout - Open in Notability

Warmup
Complete “Before” column of the anticipation guide, noting if you agree or disagree with each statement.

Reading/Discussion
What is metacognitive reflection? Why do the badges require metacognitive reflection?

In the Metacognitive Reflection Handout:
1. Read the article, “The Role of Metacognition in Learning and Achievement” and annotate with those two questions in mind.
2. Complete think-pair-share discussion to answer the previously posed questions. During this they complete the “Think-Pair-Share” graphic organizer. Share your thoughts with the class.

Deconstruct Exemplar
Read and highlight the Example Metacognitive Reflection, following the directions in the Metacognitive Reflection Handout.

Upload
Make sure the following things are uploaded to Badgelist Analytical Techniques 2. No reflections needed

Process:
1. Tutorial - you made this last week
2. Concentrations Calculations Work - Screenshot Page 14 of the packet showing the calculations you did to prepare your stock and dilutions of your standards for the Bradford Assay lab.

Product:
Standard Curve + Calculations - Upload a photo of your standard curve from the Bradford Assay Lab and the calculations you did to approximate the concentration of the unknown protein sample. You can just screenshot Step 6 parts B and C from the packet.

Write
Write your metacognitive reflection for the Analytical Techniques 2 badge using the prompts I give you. Make sure to answer ALL questions.

Closure
1. Complete the "After" column on the anticipation guide, noting if you agree or disagree with each statement.
2. On the back, please provide feedback on the new badge reflection.

• Are they better or worse than before? 
• What do you like? 
• What needs improvement?

Finish the Lab

Goal:
Generate a 5-point standard curve.
Calculate the concentration of an unknown solution using a standard curve.

Agenda:
Warmup
What does it mean?
Finish Lab

Download:
Capercard App - it's an iPhone only app

Warmup
Share your lab results in this Google Form.
View the class results. Discuss any anomalies.

What does it mean?
I'm going to talk about these slides. You're going to answer the questions using the Capercard app.


Finish the Lab
Complete the last two pages in the packet. Please ask for help if you need it.

Bradford Assay

Goal:
Carry out a Bradford Assay to determine the concentration of an unknown protein.

Agenda:
Warmup
Lab

Warmup
Complete all calculations on page 14. Make sure to show your work. That is part of the competency.

Lab
Follow the procedures on pages 14-15 to collect data.

Pre-Lab

Goal:
Perform calculations using  C=m/V.

Calculate the concentration of a dilution using C1V1=C2V2.

Agenda:
Quiz
Lab Calculations
Update Badge

Quiz
Log In to Socrative

Lab Calculations
Complete the calculations outlined in page 14 of the packet (Bradford Assay Lab). You must have the correct answers before you walk out today.

Update Badge
Upload the process pieces to the Analytical Techniques 2 badge.

While I'm Away...

Goals:

• Describe how to operate a spectrophotometer to find  λmax and absorbance values of a given solution. 
• Define concentration in terms of solute, solvent, and solution. 
• Perform calculations using  C=m/V.
• Calculate the concentration of a dilution using C1V1=C2V2.

This blog post will be your go to guide for Wednesday-Friday
Over the course of the 3 days, you will need to complete the 2 assignments below (I also wrote a note on the whiteboard).


ASSIGNMENT 1: SPECTROPHOTOMETER TUTORIAL
Work with your elbow partner to create a tutorial. Here are some resources:

• Tutorial Guidelines - This is Process Artifact 1
• User Manual
• WikiHow

ASSIGNMENT 2: CONCENTRATION CALCULATIONS
Complete pages 8-13 of the packet.

1. Go through the slides on your own and use them to complete the notes on pages 8-10 and 12 in the packet. 
2. Complete the practice problems on pages 11 and 13 of the packet. 
3. Check your answers on the answer key I left with the sub. 

EARLY FINISHERS
Should do academic recovery to clear NMs or study for upcoming competencies.

Spectrophotometry Practice

Goal:
Use a spectrophotometer to find  λmax and absorbance values of a given solution.

Agenda:
Warmup
How Specs Work
Practice
Tutorial

Warmup
Login to Socrative

How Specs Work
Using the video below and instruction from Mrs. Wallace, complete the notes section on page 5 of your packet.


Practice
Read page 6 and complete page 7 of the packet using the provided solutions.
*EDIT* Change "Green" solutions to "Blue"
When you have finished, check your measurements for accuracy with me.

Tutorial
If you finish early you can begin making your tutorial (Process piece for your badge).

Spectrophotometry Basics

Goal:
Explore how spectrophotometers use color to analyze solutions.

Agenda:
Warmup
Notes
Beer's Law Phet
Quiz

Download:
Solutions and Spectrophotometry Packet - Open in Notability

Warmup
Grab a whiteboard. With your table, draw a diagram to explain how we see the color blue.

Notes
We will go through page 2 of the packet as a class.

Beer's Law Phet
Use the Beer's Law Phet simulation to complete pages 3-4 of the packet.

Quiz
Log in to Socrative

Protein Review

Goal:
Prepare for tomorrow's quiz.

Agenda:
Quizlet
Review

Review
1. Review Quizlet Flashcards
2. Complete the Review Packet Notability
3. Complete your research

Protein Project Day 3

Goal:
Construct an argument for how the structure of a protein is important to its function.

Agenda:
Warmup - Check In
Deconstruct Exemplar
Project Research
Exit Ticket

Warmup - Check In
Complete this check in form so I can get you the help you need today

Deconstruct Exemplar
Open this example in Notability.
Highlight and label where the example describes:

• Structure
• Function
• Key Players
• Structure Function Argument
• Diseases or other factors that affect the protein function
• What does each picture show?

Project Research
Some Resources

• Proteopedia - this is a wiki page so it's not technically a reliable web source but it might help you understand your protein better
• Protein Structures - to get an idea of size and shapes of different types of proteins
• What is a protein video - talks about how the structure connects to the function of different proteins
• The Role of the Active Site - talks about how active/binding sites work

Exit Ticket
Complete this form.

Protein Project Day 2

Goal:
Construct an argument for how the structure of a protein is important to its function.

Agenda:
Warmup - Check In
Project Research
Check Out

Warmup - Check In 
Complete this check in form so I can get you the help you need today

Project Research
Answer the questions on the protein project document using research from the Protein Data Bank's "Molecule of the Month" and other reliable web resources.

You want to have all of your writing for your page done in here so you can focus on the design aspects in POD.

Check Out
Complete this check out form. 

Protein Project Day 1

Goal:
Construct an argument for how the structure of a protein is important to its function.

Agenda:
Protein Project Research

Download:
Protein Project
1. Make a copy in Google Docs
2. Name your document Per # - Name Protein Project
3. Share with me (awallace@euhsd.org)

Protein Project Research
Here are the proteins you chose on Friday.
Answer the questions on the protein project document using research from the Protein Data Bank's "Molecule of the Month" and other reliable web resources.

Protein Structure and Function

Goal:
Construct an argument for how the structure of a protein is important to its function.

Agenda:
Warmup
Protein Structure and Function
Protein Project

Download:
Protein Structure and Function Worksheet (PDF / Google Doc) - Open in Notability
Protein Project - Make a copy in Google Docs and share with me

Warmup
Finish your abstract in yesterday's journal entry.
1-2 introduction sentences that explain topic, purpose, and research question(s).
1-2 sentences describing your research methods.
1-2 sentences describing the results / findings.
1-2 sentences containing your conclusions and recommendations.

Protein Structure and Function
Follow the directions in the worksheet to complete the activity. Turn it in here.

Protein Project
Choose a molecule to research from the Protein Data Bank's "Molecule of the Month" for your protein project. Submit your choice here.

Catalase Lab

Goal:
Make inferences from lab data about the amount of enzymes present in different organisms.

Agenda:
Warmup
Catalase Lab
Abstract

Download:
Enzyme Lab - Open in Notability

Warmup
Create a new journal entry entitled "Catalase Lab."
Copy down WHAT we are learning today.
Complete the Socrative Quiz.

Catalase Lab
1. Answer the pre-lab questions (page 1) of the catalase lab document.
2. Complete the catalase lab.
3. Answer the post-lab questions.

Abstract
Write abstract in journal. Use the outline below as a guideline.
1-2 introduction sentences that explain topic, purpose, and research question(s).
1-2 sentences describing your research methods.
1-2 sentences describing the results / findings.
1-2 sentences containing your conclusions and recommendations.

Enzymes

Goal:
Explain how the structure of an enzyme allows it to speed up the rate of chemical reactions.

Agenda:
Notes + Socrative
Practice

Download:
Enzymes and their Function - Open in Notability

Warmup
Create a new journal entry entitled "Enzymes."
Copy down WHAT we are learning today.

Notes + Socrative
Log in to Socrative. This is a long lecture and I will be asking you to stop and answer questions throughout on Socrative.
Take notes on these slides.


Practice
Complete the "Enzymes and their Function" worksheet. Then submit your completed worksheet to this Google Form.

Active Sites

Goal:
Create a model to explain the role of shape and chemical properties of amino acid R-groups in a protein’s active site.

Agenda:
Warmup
How do we smell?
Model Olfactory Receptors

Download:
The Role of the Active Site - This is a reading. Open in your preferred app for annotation (Notability or Google Docs)

Warmup
Create a new journal entry entitled "Active Sites."
Copy down WHAT we are learning today.
Log in to Socrative.

How do we smell?

Watch TedEd video “How do we smell?”

In your journal, write a hypothesis for the question: How do our olfactory receptors distinguish between different smells?
Read “The Role of the Active Site” and revise your hypothesis.

Model Olfactory Receptors
1. Work in pairs to create a model of olfactory receptors that meet the shape and chemical property requirements of the provided “smell molecules” (puzzle pieces).
2. Using your model, create a stop motion video to explain how the olfactory receptors work using the terms: functional groups, receptor, active site, chemical properties (of amino acid R-group).

Protein Folding

Goal:

Model how the intermolecular forces between amino acids cause proteins to fold in predictable shapes. Hypothesize how the structure of the folded protein might contribute to its function.

Agenda:
Warmup
ACT Reading
Protein Folding Activity
Revised CER

Warmup
Create a new journal entry entitled "Protein Folding."
Copy down WHAT we are learning today.
Write a CER to answer the question: What structural features of a polypeptide most contribute to protein folding? Explain.

ACT Reading
Read and answer the questions to this ACT practice passage.

Protein Folding Activity
Follow the directions in this document to complete the protein folding activity. Then answer the following questions in your science journal:

1. Take a picture of your folded protein and explain how you arrived at this shape.  Use the words secondary and tertiary and include a discussion of R-group properties (such as charge etc.)
2. What step needs to occur next before the protein can be considered “complete”?
3. Imagine for a moment your protein has a “job.”  Be creative and explain how it’s shape might help it do it’s job.  Refer back to the 9 types of proteins  for ideas.

Revised CER
Use what you learned in the protein folding activity and the ACT reading to revise your CER from the beginning of class.

Protein Structure Basics

Goal:
Identify the characteristic structural features of proteins at the primary, secondary, tertiary, and quaternary level.

Agenda:
Warmup
Video Notes
Similarities/Differences
Socrative

Download:
Video Notes Worksheet - Open in Notability

Warmup
Create a new journal entry entitled "Protein Structure Basics."
Copy down WHAT we are learning today.
Write a CER to answer the question: Considering what you learned in the last two lessons, do you think all proteins have similar or different structures? Explain.

Video Notes
Use this Bozeman Science video  to complete the Video Notes Worksheet.

Similarities/Differences
Work on whiteboards in table groups to outline the ways that all protein structures are the same and how their structures are different. Then use this information to revise the CER you wrote at the beginning of class.

Socrative
Login and take the quiz.

Types of Proteins

Goal:
Describe the 9 different functions of proteins in the human body.

Agenda:
Warmup
Protein Slides
Protein Game

Warmup
Create a new journal entry entitled "Types of Proteins."
Copy down WHAT we are learning today. Hint: It's written on the whiteboard and at the top of this blog post.
Write down everything you know about proteins.

Protein Slides
In your groups create a google slides presentation entitled "Types of Proteins." Share it with your table-mates and me.
​Use this website as a starting point. Create 1 slide for each type of protein that includes:

1. ​Name of Class of Protein
2. Role of that type of protein in the body
3. Example of what your specific protein does
4. Visual representation to help you remember

Protein Game

Work with your elbow partner to complete the protein scavenger hunt. Winner gets stickers! Finishers get stamps!

Macromolecules

Goal:
Use patterns in structure and information about function to classify macromolecules as proteins, lipids, nucleic acids, or carbohydrates.

Agenda:

Warmup

Macromolecules Graphic Organizer

Card Sort

Academic Recovery

Warmup

1. Create a new journal entry entitled "Macromolecules."
2. Copy down WHAT we are learning today. Hint: It's written on the whiteboard and at the top of this blog post.
3. Answer the question: Why do we eat?

Macromolecules Graphic Organizer

Use this compilation of resources to complete the graphic organizer.

• Boundless: Types of Macromolecules
• Reading: Polymers and Macromolecules
• Crash Course: You Are What You Eat
• Khan Academy: Macromolecules

Card Sort

Sort the cards as lipids, carbs, nucleic acids, or proteins. Verify your answer with the teacher.

Academic Recovery

Use this time wisely.

What's that smell?

Goal:
Identify the functional groups in a molecule and predict how the functional group affects how the molecule interacts with the human body.

Agenda:
Warmup
Smells Lab
Card Sort
Socrative Quiz
Reflection

Download:
Smells and Functional Groups Worksheet (import into Notability)

Warmup

1. Create a new journal entry entitled "Smells."
2. Copy down WHAT we are learning today. Hint: It's written on the whiteboard and at the top of this blog post.
3. Answer the question: How do you smell things?

Smells Lab
Complete page 1 of the worksheet, testing the smell samples, describing them, and categorizing them as fishy, putrid, sweet, or minty.

Card Sort
Complete pages 2 and 3 of the worksheet, sorting the cards by functional group then connecting specific functional groups to their smells.

Socrative Quiz
Login to Socrative.

Reflection
Open up your science journal. At the bottom of today's entry, use the crosscutting concepts of patterns and structure & function to explain why different substances have different smells.

Finish IMF Project

Goal:
Complete the IMF project.

Agenda:
Warmup
Review
Lab Cleanup
Work Time!

Warmup
Log in to Socrative and answer the question, what is the relationship between intermolecular forces (hydrogen bond, dipole dipole, London dispersion forces) and the state of matter (solid, liquid gas) at room temperature?

Review
Why do some molecules form stronger intermolecular attractions than others?

Lab Cleanup
Take care of this place.

Work Time
Complete your slides and study for Monday's lab quiz.

Lab Day!

Goal:
Collect and record lab data.

Agenda:
Lab Check In
Prep for Data Recording
Conduct Lab
Work on Slides

Lab Check In
Grab a whiteboard marker and use the checklist on your lab bench to make sure your lab has all the right equipment. Let me know if you are missing something.

Prep for Data Recording
At the bottom of the google doc, create a new section called data and observations. Make a table to record the necessary data for your experiment.

Conduct Lab
Carry out your lab! If you would like me to check your procedure to make sure it works come see me.

Work on Slides
If you have time start working on your slides. The google doc should be complete by now.

IMF Experiment Plan

Goal:
Develop an investigation plan and describe the data that will be collected and the evidence to be derived from the data.

Agenda:
Warmup - Annotate Rubric
Start Slides
Complete Experiment Design Plan

Warmup - Annotate Rubric

Your competency is a combination of the Polarity Lab Plan and a Slides Presentation.

On the provided rubric, make a note of which slide or where in the Polarity lab plan you will show evidence of each of the criteria. You can also view the rubric here. 

Start Slides

1. Have one of your group members make a copy of this Google Slides presentation.
2. Rename the document Period-First Names IMF Lab
3. Share the document with your teammates and me (awallace@euhsd.org).
4. Complete slides 3-5 using the work you did last Friday. 

Complete Experiment Design Plan
Work with your group members to complete the experiment design plan and write a procedure to be carried out on Wednesday.

Selecting Samples for Polarity Lab

Goal:
Select appropriate samples for a polarity lab. Write a research question and hypothesis.

Agenda
Group Quiz
Brainstorm
Notes: Sample Types
Sample Selection and Research
Exit Slip

Group Quiz

1. Select one scholar in your project group to be your scribe. 
2. Scribes, open this quiz. 
3. Work with your project group to complete the quiz. Feedback will be immediately sent to your scribe. 

Brainstorm
What different substances would you be interested in comparing polarity?

Notes: Sample Types
Follow along and take notes on when to use different types of samples and why.

Sample Selection and Research
With your project groups decide on 2-4 substances that you want to test in your laboratory investigation. You can select from this list or come up with your own with my approval but you must have a reason WHY you want to compare those things. 
Once you have made your selection, complete the second part of your Polarity Plan document from yesterday for the compounds you chose. 

Exit Slip
One per group.
On the provided 1/2 sheet write: 

1. Your team member names
2. your research question
3. the compounds you selected
4. Your hypothesis predicting which one is more polar

Polarity Laboratory Techniques

Goal:
Differentiate when, why, and how to use melting point tests, boiling point tests, evaporative cooling tests, chromatography, and distillation to study different compounds. 

Agenda:Team Selection
Laboratory Techniques Research 

Team Selection
Select a team of 3 scholars. If you would rather be assigned to a group see me. Once your team is approved find a new seat (2 teams per table).

Laboratory Techniques Research

1. Have one team member make a copy of this document 
2. Rename the document Period-First Names Polarity Lab Plan
3. Share the document with your teammates and me (awallace@euhsd.org).
4. Complete the first page comparing the 5 laboratory techniques. 

Choose Your Own Adventure

Goal:
Complete SOMETHING to further your education.

Choose Your Own Adventure
Select one of the options below and work on it for the entire class period. You may NOT waste this time by playing games on your iPad or socializing. 

Option 1:
Clear NMs in Biochem

Option 2:
Clear NMs in other classes

Option 3:
Finish the Planning 2 Badge using your lab report as your final product piece. 

Option 4:
Work on AP for Ms. Stillman

Option 5:
Read. If you have nothing to read I have fun science books and back issues of National Geographic at the back of the room. 

Intermolecular Forces

Goal:
Construct an explanation relating the intermolecular forces of a molecule to its boiling point. 

Agenda:

Warmup

Notes

Reading and Questions

Warmup

1. On your table you have a paper labeled "water," "methanol," "acetone," and "nonane."
2. Draw the Lewis structure for your molecule. 
3. Write the dipole for each bond in your compound if applicable. 
4. Make a note of the bond polarity and rotational symmetry/asymmetry of your molecule. 
5. Determine if your molecule is polar or nonpolar. 

Notes

1. Watch this video and take notes in your table. You can partner up to do this. 
2. Create a new journal entry entitled "Intermolecular Forces."
1. Write down the 3 different intermolecular forces you learned about and their definitions.
2. Write 3 main points about intermolecular forces that you learned from the video.

Reading and Questions

1. Identify the functional group in your molecule. Using table 4.1 label it with the correct intermolecular force. 
2. Use the provided tables and graphs to answer the questions on this Google Form. You will get an email with your results after school. 

Polarity

Goal:
Categorize molecules as polar or nonpolar.

Agenda:
Warmup
Notes
Practice
Apply to Lab

Warmup
Complete this Google form using your lab results from yesterday.

Notes
Create a new journal entry entitled "Polar or Nonpolar?"
Take notes on the slides below. Your notes should include:

• Definition of polar and nonpolar bonds
• Definition of rotational symmetry
• Photo/Screenshot or recreation of Frayer model from the slides

Practice
Using the notes you just took and the simulation in class, complete this worksheet. 
We are trying a new thing where you do worksheets in Google forms so I can see your work and quickly give you feedback on what you did. Tell me how you like it. 

Apply to Lab
On your lab handout, complete the Lewis Structures and VSEPR diagrams. Draw a MOLECULE dipole on the VSEPR diagram and label if each compound is polar or nonpolar. 

Intermolecular Forces

Goal: 
Formulate descriptive questions about the molecular scale causes physical properties (melting point, boiling point, separation).  

Agenda:
Warmup
Lab Stations
Questions

Warmup
Draw the Lewis Structures and 3D models for the 4 compounds on your handout. Do not draw a 3D model for nonane.

Lab Stations
Complete the 4 lab stations. You will have 15 minutes at each station. It is VERY important to work quickly but safely. Wear safety glasses.

Questions
Answer the 3 questions on the back of your handout. Write your name at the top and turn it in to me at the end of class.

Badge Day

Goal:
Earn the Planning 2 badge.

Agenda:
Warmup
How would you teach a freshman?
How do you write a reflection?
Badge Work

Warmup
Create a new journal entry entitled Self-Score. Use the rubric in the sidebar to score your journal. Also consider the worksheets you did for the bonding unit in your self-score. 

How would you teach a freshman?
Grab a whiteboard. Imagine you had to teach a freshman how to design an experiment. You should be an expert by now. What would you tell them? Write it on your whiteboard. 

How do you write a reflection?
What is the purpose of the badge portfolio? What writing should you include to enhance the artifacts you upload?

Badge Work

Complete the planning 2 badge.

1. Upload your experiment design plan for your "Process" artifact and write a reflection.
2. Upload your completed lab report as the "Product" artifact and write a reflection. 
3. In the "Metacognitive Reflection," explain how being able to use the experiment design plan and plan experiments makes you a better scientist. 
4. Request feedback.

Comp. 6 Prep

Goal:
Prepare for Monday's test.

Agenda:
Warmup
Study!

Warmup
Create a new journal entry entitled Bonding Self-Assessment. Copy the 7 objectives into your journal and rate your understanding for each objective.

+   if you get it

-    if you sort of get it

0   if you don't get it'

Highlight the objectives you need to work on the most today.

1. Contrast ionic and covalent compounds in terms of name, metallic character of atoms, bond type, structure, behavior in water, and examples. 
2. Use electronegativity to predict whether atoms will form ionic bonds or covalent (polar and non-polar) bonds.
3. Compare and contrast salts and molecules based on observable properties and bond types. 
4. Draw structural formulas using the HONC 1234 rule.
5. Predict the ion and/or the number of bonds an atom will form based on its location in the periodic table.
6. Draw Lewis Structures for a given molecule.
7. Draw and name the 3D shape of a given molecule using VSEPR. 

Study!
Use the provided resources to prepare yourself for tomorrow's test:
Worksheets (Covalent vs. Ionic Bonds; HONC1234; Lewis Structures; Model Building)
Haiku Practice Test
Quizlet Flashcards

VSEPR

Goals:
Draw and name the 3D shape of a given molecule using VSEPR.

Agenda:
Warmup
Read
Practice
Exit Ticket

Warmup
Watch the following video. On whiteboards, draw a model explaining why the balloons are sticking to the girl's face.


Read
Read this excerpt and try to answer the question: How do we know what shape a molecule will take?

Practice
Complete this worksheet in Notability.

Exit Ticket
Complete the exit ticket. 

Lewis Structures

Goal:
Draw Lewis Structures for a given molecule.

Agenda:
Warmup
Notes
Practice
Exit Ticket

Warmup
On whiteboards, make a key describing the parts of the following model:

Your key should identify how each of the following things are represented:

• Atoms
• Single Bond
• Double Bond
• Nonbonding electrons

Notes
Create a new note in Notability. We will take notes on these slides. 

Practice
Complete parts 2 and 3 of yesterday's worksheet in Notability

Exit Ticket
Complete the exit ticket.

Bonding and Ions

Goal:
Predict the ion and/or bonds an atom will form based on its location in the periodic table.

Agenda:
Quiz
Worksheet
Socrative

Quiz
Take the bonding quiz. We will trade and correct.

Worksheet
Download this worksheet and open it in Notability. We will complete Part 1 together in class. 

Socrative
Log in and answer the questions. 

HONC 1234

Goal:
Draw structural formulas using the HONC 1234 rule.

Agenda:

Warmup

Practice

Exit Ticket

Warmup

On the paper I give you, do the following with your elbow partner:

1. On the bottom of the paper, draw the Lewis dot structures for C, O and H. Forget what those are??….grab your periodic tables and see if you can figure them out!!
2. On your Lewis dot structures, highlight which electrons you think are bonding in blue and nonbonding in yellow. (Hint: of the three only oxygen has non-bonding electrons)
3. Write a chemical formula for the molecule. Name this molecule.
4. Highlight the NON-POLAR covalent bonds yellow, POLAR covalent blue.  Why are there no ionic bonds here?
5. Draw the dipole moments for each bond +-->
6. Compare the Lewis dot structures and the structural model. Where are the bonding valence electrons represented on the structural model? Draw them in. 
7. Add the non-bonding electrons to the structural model. 
8. Using the model kit what atoms do you think the red, black, and yellow balls represent?  How do you know that? Write this on the back of your paper.

Practice

1. Open this worksheet in Notability.
2. Complete the worksheet

Exit Ticket

On the provided paper draw a structure for the molecule C2H6O

Compounds in Water

Goal:
Compare and contrast salts and molecules based on their behavior in water.

Agenda
Define Polar
Dipoles and Charges
Pre-Lab and Lab

Define Polar

1. Read this comic.
2. On whiteboards create a Frayer model (definition, characteristics, examples, and nonexamples) for the  word "Polar."
3. Take a picture of your whiteboard.

Dipoles and Charges
We are going to add dipoles and charges to Part 2 of yesterday's worksheet. 

Pre-Lab and Lab

1. Create a new journal entry entitled "Compounds in Water."
2. Select all, copy, and paste this document into your science journal. 
3. Complete the pre-lab (Simulation and Hypothesis).
4. Complete the lab.
5. Complete the discussion.

Bond Types

Goal:
Use electronegativity to predict whether atoms will form ionic or covalent (polar or nonpolar) bonds.

Agenda
ACT Practice
Notes
Practice
Journal

ACT Practice
You have 10 minutes to answer the ACT practice questions. After we will debrief and discuss challenges and strategies.

Notes
Create a new journal entry entitled "Bond Types." Answer the questions:

• Why do atoms bond?
• Define the following bonds and explain when they occur. 
• Ionic Bond
• Polar Covalent Bond
• Nonpolar Covalent Bond

Practice

Make a copy of this worksheet and complete in class. 

Journal

In your journal, answer the following questions:

1. Identify the metallic character of magnesium and chlorine.
2. Calculate the electronegativity difference between magnesium and chlorine. 
3. Write a CER explaining whether you think MgCl2 is ionic, nonpolar covalent, or polar covalent. Use the answers to questions 1 and 2 as evidence. 

Salts vs. Molecules

Goal:
Contrast salts and molecules in terms of bond type, description of electrons, metallic character of atoms, structure, behavior in water, and examples.

Agenda:
Warmup
Review
Graphic Organizer

Warmup
Create a new entry in your journal entitled "Salts vs. Molecules." Answer the following questions:

• Where are metals on the periodic table? Nonmetals?
• Electronegativity trends?
• Are metals or nonmetals more electronegative?

Review

Go to Kahoot

Graphic Organizer

1. In your science journal under your warmup create a table with 3 columns and 6 rows.
2. In columns 2 and 3, write the words "Salts" and "Molecules"
3. Carefully read today's learning objective and use this information to fill in the rows in column 1.
4. Use these slides and research as necessary to complete your graphic organizer.

Magnesium Meets Chlorine

Goals:
Take careful observations of a chemical reaction occurring.  
Model a chemical reaction showing the law of conservation of matter by using balanced equations and particle diagrams.

Agenda:
Warmup
Lab

Warmup
Create a new entry in your science journal entitled "Magnesium Meets Chlorine," then write down everything you know about magnesium and chlorine based on the periodic table.

Lab

1. Open this lab document.
2. Copy the Procedures, Data/Observations, and Analysis into your science journal under your warmup.
3. Carry out the lab procedures and complete the Data/Observations table.
4. Work with your tablemates to complete the analysis questions. You may want to use a whiteboard to draw models. 

All the Error

Goal:
Complete your lab report.

Agenda:
Kahoot
Outline
Write
Review

Kahoot
Go to Kahoot and get ready to review reliability and validity.

Outline
On whiteboards, list all of the evidence you have available for errors in your experiment. 

• Examples: not enough trials, high %RSD, visual observations of your setup
• Nonexamples: human error, calculation error, measuring wrong

Write

Finish your report by writing your PE paragraph. It should be in the form of a CERER. Be sure to include AT LEAST two sources of error.

Review

Using the rubric on your table, give yourself a score on your completed lab report. Write your score and reasoning on the provided paper. 

Write CER

Goal:
Write a CER based on your lab data. 

Agenda:
Warmup
Outline
Write
Revise

Warmup
Go to Socrative and answer the question: What factors might affect the rate of cellular respiration?

Outline
Work with your elbow partner to outline your claim, evidence, and reasoning. When we make our claim we want to GENERALIZE what the data says about cellular respiration and use REASONING that is connected to scientific concepts. 

Write
Write you CER silently.

Revise
Trade your lab report with your partner. Partner please highlight the following:

• Claim - Red
• Evidence - Green
• Reasoning - Yellow

Discuss 1 strength and 1 weakness of the CER you read with your partner. 

Revise your CER based on commentary. 

Data Collection and Representation

Goal:
Collect and represent your lab data in both a table and a graph with appropriate labels and units. 

Agenda:
Create-A-Table
Finish Lab
Make Graphs
Complete Data/Observations and Results

Create-A-Table
If you haven't already, make a data table in Excel for your independent and dependent variables. Make sure to include:

• Labels and Units
• All Trials
• Statistics (if you have multiple trials)
• Average
• %RSD: Standard Deviation/Average x100

Finish Lab

1. Collect your lab measurements and record them in the Excel table you created.
2. Clean up from the lab. Test tubes in the glass disposal, beakers washed and put on the gray shelves.

Make Graphs

1. Review different types of graphs and when to use them on this website. 
2. Graph your data. Refer to the graphs you made on 1/11 to make sure you have all of the components of a good graph.

Complete Data/Observations and Results

1. Copy and paste the table and graph from Excel into your lab report Google Doc.
2. Write a caption for your graph identifying and describing any patterns you see in the graph. 

Pea Lab Take 2

Goal: 
Complete the Background and Materials/Methods sections of your lab report. 

Agenda:
Lab Cleanup
Copy Procedures
Set Up Experiments
WORK

Lab Cleanup
Take care of this place and take pride in YOUR lab space! We need to inventory the drawers, wash and put away all unused glassware, and wipe down the benches. 

Copy Procedures

1. Copy the procedures you wrote into your lab report under the Materials and Methods heading.
2. Make sure to add the data collection step if you haven't already. We will go over this as a class.
3. Under the Data and Observations heading, add a blank table for data collection on Monday. Your table should include:
1. Independent Variable 
2. Dependent Variable
3. Units (as applicable)

Set Up Experiments
Set up your experiment, following your procedure, to run over the weekend. 

WORK

1. Finish your Background
2. Edit your Materials and Methods section as needed.
3. Complete the "Process" piece for the Planning 2 badge. 
1. Upload your experiment plan as the artifact.
2. Write a text reflection. Imagine yourself a year from now needing to plan an experiment. Explain to yourself how to use the experiment plan document to create a new experiment.